{"Package":"metagenomeSeq","Title":"Statistical analysis for sparse high-throughput sequencing","Version":"1.14.0","Date":"2016-04-17","Author":"Joseph Nathaniel Paulson, Hisham Talukder, Mihai Pop, Hector Corrada\nBravo","Maintainer":"Joseph N. Paulson ","Description":"metagenomeSeq is designed to determine features (be it\nOperational Taxanomic Unit (OTU), species, etc.) that are\ndifferentially abundant between two or more groups of multiple\nsamples. metagenomeSeq is designed to address the effects of\nboth normalization and under-sampling of microbial communities\non disease association detection and the testing of feature\ncorrelations.","License":"Artistic-2.0","Depends":"\nR(>= 3.0),\nBiobase,\nlimma,\nglmnet,\nmethods,\nRColorBrewer","Suggests":"\nannotate,\nBiocGenerics,\nbiomformat,\nknitr,\ngss,\nRUnit,\nvegan,\ninteractiveDisplay","Imports":"\nparallel,\nmatrixStats,\nforeach,\nMatrix,\ngplots","VignetteBuilder":"knitr","URL":"https://github.com/nosson/metagenomeSeq/","BugReports":"https://github.com/nosson/metagenomeSeq/issues","biocViews":"Classification, Clustering, GeneticVariability,\nDifferentialExpression, Microbiome, Metagenomics, Normalization, Visualization,\nMultipleComparison, Sequencing, Software","RoxygenNote":"5.0.1","readme":"metagenomeSeq\n=============\n\nStatistical analysis for sparse high-throughput sequencing\n\n $\"How$ $\"Percentile$ $\"Support$ $\"average$ \n\n\nmetagenomeSeq is designed to determine features (be it Operational Taxanomic Unit (OTU), species, etc.) \nthat are differentially abundant between two or more groups of multiple samples. metagenomeSeq is designed \nto address the effects of both normalization and undersampling of microbial communities on disease \nassociation detection and the testing of feature correlations.\n\nTo install the latest release version of metagenomeSeq:\n```S\nsource(\"http://bioconductor.org/biocLite.R\")\nbiocLite(\"metagenomeSeq\")\n```\n\nTo install the latest development version of metagenomeSeq:\n```S\ninstall.packages(\"devtools\")\nlibrary(\"devtools\")\ninstall_github(\"Bioconductor-mirror/metagenomeSeq\")\n```\n\nAuthor: [Joseph Nathaniel Paulson](http://bcb.dfci.harvard.edu/~jpaulson), Hisham Talukder, [Mihai Pop](http://www.cbcb.umd.edu/~mpop), [Hector Corrada Bravo](http://www.cbcb.umd.edu/~hcorrada)\n\nMaintainer: Joseph N. Paulson : jpaulson at jimmy.harvard.edu\n\nWebsite: www.cbcb.umd.edu/software/metagenomeSeq","repoType":"bioconductor"}

Description

Usage

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See Also