metagenomeSeq (version 1.14.0)

cumNorm: Cumulative sum scaling normalization

Description

Calculates each column's quantile and calculates the sum up to and including that quantile.

Usage

cumNorm(obj, p = cumNormStatFast(obj))

Arguments

obj

An MRexperiment object.

p

The pth quantile.

Value

Object with the normalization factors stored as a vector of the sum up to and including a sample's pth quantile.

See Also

fitZig cumNormStat

Examples

data(mouseData)
cumNorm(mouseData)
head(normFactors(mouseData))