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metagenomeSeq (version 1.14.0)

exportStats: Various statistics of the count data.

Description

A matrix of values for each sample. The matrix consists of sample ids, the sample scaling factor, quantile value, the number identified features, and library size (depth of coverage).

Usage

exportStats(obj, p = cumNormStat(obj), file = "~/Desktop/res.stats.tsv")

Arguments

obj
A MRexperiment object with count data.
p
Quantile value to calculate the scaling factor and quantiles for the various samples.
file
Output file name.

Value

None.

See Also

cumNorm quantile

Examples

Run this code

# see vignette

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