getZ

Matrix (m x n) of estimate responsibilities (probabilities that a
count comes from a spike distribution at 0).

Matrix (m x n) of estimate responsibilities (probabilities that
a count comes from a spike distribution at 0) that are actually used
(following convergence).

zUsed

A vector of size M booleans saying if a feature is still
active or not.

stillActive

Vector of size M with the current negative log-likelihoods.

Vector of size M with the converged negative log-likelihoods.

nllUSED


Calculate the current Z estimate responsibilities (posterior probabilities)


metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

getZ: Calculate the current Z estimate responsibilities (posterior probabilities)

Description

Usage

Arguments

Value

See Also