libSize

libSize,MRexperiment-method


The libSize vector represents the column (sample specific) sums of features,
i.e. the total number of reads for a sample or depth of coverage. It is used by
<code><a rd-options="" href="/link/fitZig?package=metagenomeSeq&version=1.14.0" data-mini-rdoc="metagenomeSeq::fitZig">fitZig</a></code>.


metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

Joseph N Paulson

metagenomeSeq

Statistical analysis for sparse high-throughput sequencing

libSize function


The libSize vector represents the column (sample specific) sums of features,
i.e. the total number of reads for a sample or depth of coverage. It is used by
<code><a rd-options='' href='fitZig'>fitZig</a></code>.


libSize: Access sample depth of coverage from MRexperiment object

Description

Usage

Arguments

Value

Examples