mouseData

This is a list with a matrix of OTU counts, taxa annotations for each OTU, otu names, and vector of phenotypic data. Samples along the columns and OTUs along the rows.

metagenomeSeq is designed to determine features (be it
Operational Taxanomic Unit (OTU), species, etc.) that are
differentially abundant between two or more groups of multiple
samples. metagenomeSeq is designed to address the effects of
both normalization and under-sampling of microbial communities
on disease association detection and the testing of feature
correlations.

Joseph N Paulson

metagenomeSeq

Statistical analysis for sparse high-throughput sequencing

mouseData function

A list of OTU matrix, taxa, otus, and phenotypes

mouseData: OTU abundance matrix of mice samples from a diet longitudinal study

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