metagenomeSeq (version 1.14.0)

zigControl: Settings for the fitZig function

Description

Settings for the fitZig function

Usage

zigControl(tol = 1e-04, maxit = 10, verbose = TRUE, dfMethod = "modified", pvalMethod = "default")

Arguments

tol

The tolerance for the difference in negative log likelihood estimates for a feature to remain active.

maxit

The maximum number of iterations for the expectation-maximization algorithm.

verbose

Whether to display iterative step summary statistics or not.

dfMethod

Either 'default' or 'modified' (by responsibilities).

pvalMethod

Either 'default' or 'bootstrap'.

Value

The value for the tolerance, maximum no. of iterations, and the verbose warning.

See Also

fitZig cumNorm plotOTU

Examples

control =  zigControl(tol=1e-10,maxit=10,verbose=FALSE)