metan (version 1.19.0)

coincidence_index: Computes the coincidence index of genotype selection

Description

Computes the coincidence index (Hamblin and Zimmermann, 1986) as follows:

CI = A-CM-C 100 where A is the number of selected genotypes common to different methods; C is the number of expected genotypes selected by chance; and M is the number of genotypes selected according to the selection intensity.

Usage

coincidence_index(..., total, sel1 = NULL, sel2 = NULL)

Value

A list with the following elements:

• coincidence: A data frame with the coincidence index, number of common genotypes and the list of common genotypes for each model combination.

• coincidence_mat: A matrix-like containing the coincidence index.

• genotypes: The number of common genotypes for all models, i.e., the insersection of the selected genotypes of all models

Arguments

...

A comma-separated list of objects of class mgidi, mtsi fai_blup, or sh. When a model is informed, then the selected genotypes are extracted automatically.

total

The total number of genotypes in the study.

sel1, sel2

The selected genotypes by the method 1 and 2, respectively. Defaults to NULL.

References

Hamblin, J., and M.J. de O. Zimmermann. 1986. Breeding Common Bean for Yield in Mixtures. p. 245-272. In Plant Breeding Reviews. John Wiley & Sons, Inc., Hoboken, NJ, USA.tools:::Rd_expr_doi("10.1002/9781118061015.ch8")

Examples

# \donttest{
sel1 <- paste("G", 1:30, sep = "")
sel2 <- paste("G", 16:45, sep = "")
coincidence_index(sel1 = sel1, sel2 = sel2, total = 150)
# }