methylKit (version 0.99.2)

getSampleID: Get or Set Sample-IDs of the methylKit objects

Description

The function returns or replaces the sample-ids stored in any of the following methylKit objects: methylRaw, methylRawDB, methylBase, methylBaseDB, methylRawList, methylRawListDB, methylDiff, methylDiffDB.

Usage

getSampleID(x)
getSampleID(x) <- value
getSampleID(x) <- value
# S4 method for methylRawList
getSampleID(x)
# S4 method for methylRawList
getSampleID(x) <- value
# S4 method for methylBase
getSampleID(x)
# S4 method for methylBase
getSampleID(x) <- value
# S4 method for methylRaw
getSampleID(x)
# S4 method for methylRaw
getSampleID(x) <- value
# S4 method for methylDiff
getSampleID(x)
# S4 method for methylDiff
getSampleID(x) <- value
# S4 method for methylRawListDB
getSampleID(x)
# S4 method for methylRawListDB
getSampleID(x) <- value
# S4 method for methylBaseDB
getSampleID(x)
# S4 method for methylBaseDB
getSampleID(x) <- value
# S4 method for methylRawDB
getSampleID(x)
# S4 method for methylRawDB
getSampleID(x) <- value
# S4 method for methylDiffDB
getSampleID(x)
# S4 method for methylDiffDB
getSampleID(x) <- value

Arguments

x

an methylBaseDB,methylRawListDB or methylDiffDB object

value

a valid replacement vector for the sample-ids of the object

Examples

# NOT RUN {
data(methylKit)

#The Sample-Ids can be printed ..
getSampleID(methylBase.obj)

# .. or replaced. 
newObj <- methylBase.obj
getSampleID(newObj) <- c("sample1","sample2","sample3","sample4")
getSampleID(newObj)


# }