methylKit (version 0.99.2)

getTreatment: Get or Set treatment vector of methylKit object

Description

The function returns or replaces the treatment vector stored in any of the following methylKit objects: methylBase,methylRawList,methylBaseDB, methylRawListDB,methylDiff,methylDiffDB.

Usage

getTreatment(x)
getTreatment(x) <- value
getTreatment(x) <- value
# S4 method for methylRawList
getTreatment(x)
# S4 method for methylRawList
getTreatment(x) <- value
# S4 method for methylBase
getTreatment(x)
# S4 method for methylBase
getTreatment(x) <- value
# S4 method for methylDiff
getTreatment(x)
# S4 method for methylDiff
getTreatment(x) <- value
# S4 method for methylRawListDB
getTreatment(x)
# S4 method for methylRawListDB
getTreatment(x) <- value
# S4 method for methylBaseDB
getTreatment(x)
# S4 method for methylBaseDB
getTreatment(x) <- value
# S4 method for methylDiffDB
getTreatment(x)
# S4 method for methylDiffDB
getTreatment(x) <- value

Arguments

x

a methylKit object

value

a valid replacement for the treatment vector of the object

Examples

# NOT RUN {
data(methylKit)

# The treatment vector can be printed ..
getTreatment(methylBase.obj)
 
# .. or replaced with a new one  
newObj <- methylBase.obj
getTreatment(newObj) <- c(1,2,3,4)
getTreatment(newObj)


# }