methylKit (version 0.99.2)

makeMethylDB: coerce methylKit objects from memory to flat file database objects

Description

The function converts in-memory methylKit objects to methylDB objects

Usage

makeMethylDB(obj, dbdir = getwd())
# S4 method for methylBase
makeMethylDB(obj, dbdir = getwd())
# S4 method for methylRaw
makeMethylDB(obj, dbdir = getwd())
# S4 method for methylDiff
makeMethylDB(obj, dbdir = getwd())
# S4 method for methylRawList
makeMethylDB(obj, dbdir = getwd())

Arguments

obj

an methylBase, methylRaw, methylRawList or an methylDiff object

dbdir

directory where flat file database(s) should be stored, defaults to getwd(), working directory.

Value

an methylBaseDB,methylRawDB, methylRawListDB or an methylDiffDB object

Examples

# NOT RUN {
data(methylKit)


makeMethylDB(methylBase.obj,"my/path")
# }
# NOT RUN {
# }