methylBase.obj

<p><code>methylBase</code>, <code>methylDiff</code> and <code>methylRawList</code>. 
 You can load the data using <code>data(methylKit)</code></p>

methylKit is an R package for DNA methylation analysis and
annotation from high-throughput bisulfite sequencing. The package is
designed to deal with sequencing data from RRBS and its variants, but also
target-capture methods and whole genome bisulfite sequencing. It also has
functions to analyze base-pair resolution 5hmC data from experimental
protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files
only.

Altuna Akalin

methylKit

DNA methylation analysis from high-throughput
bisulfite sequencing results

Matthias Kormaksson

Sheng Li

Arsene Wabo

Adrian Bierling

Alexander Gosdschan

methylBase.obj function

<p>methylBase.obj object stores the location and methylation 
information for bases that
  are covered in all samples. <code>methylBase</code> partially extends 
  <code>data.frame</code> S3 class.</p>

Format

Example methylBase object. — methylBase.obj

Example methylBase object.

methylBase.obj: Example methylBase object.

Description

Arguments

Format