methylDiff.obj

<p><code>methylBase</code>, <code>methylDiff</code> and <code>methylRawList</code>. 
 You can load the data using <code>data(methylKit)</code></p>

methylKit is an R package for DNA methylation analysis and
annotation from high-throughput bisulfite sequencing. The package is
designed to deal with sequencing data from RRBS and its variants, but also
target-capture methods and whole genome bisulfite sequencing. It also has
functions to analyze base-pair resolution 5hmC data from experimental
protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files
only.

Altuna Akalin

methylKit

DNA methylation analysis from high-throughput
bisulfite sequencing results

Matthias Kormaksson

Sheng Li

Arsene Wabo

Adrian Bierling

Alexander Gosdschan

methylDiff.obj function

<p>The Differential methylation information is stored in 
methylDiff.obj object.
  <code>methylBase</code> partially extends <code>data.frame</code> S3 class.</p>

Format

Example methylKit objects. — methylDiff.obj

Example methylKit objects.

methylDiff.obj: Example methylKit objects.

Description

Arguments

Format