methylMnM (version 1.10.0)

cpgcount: Call C programs to R.

Description

Call C programs to R for calculate which CpG are contained in MRE-CpG.

Usage

cpgcount(data2, data3, cpg2, cpg3, datalength, cpglength, 
count=rep(0,cpglength))

Arguments

data2

Start position of each MRE-CpG.

data3

End position of each MRE-CpG.

cpg2

Start position of each CpG.

cpg3

End position of each CpG.

datalength

The number of MRE-CpG.

cpglength

The number of MRE-CpG.

count

MRE-CpG count of each CpG.

Value

MRE-CpG count of each CpG.

Examples

  cpg<-matrix( 1:800, nrow=400 )
  cpg[,2]<-cpg[,1]+2
  data<-cpg[3:100,]
  data[,1]<-data[,1]-1
  data[,2]<-data[,2]+1
  f <- cpgcount(data[,1], data[,2], cpg[,1], cpg[,2], length(data[,1]),
 length(cpg[,2]), count=rep(0,length(cpg[,2])))