experiment: Function for validate the results from all 12 methods.
Description
Function for validate the results from all 12 methods.Usage
experiment(allmethods, topk, Expgroundtruth, LFC, downreg)
Arguments
allmethods
A list of results (matrix with columns are miRNA and rows are mRNAs).
topk
Top k targets of each miRNA that will be extracted for validation
Expgroundtruth
The ground truth in .csv file for validation
LFC
log fold-change for validating the results using transfection experiments
downreg
If set to TRUE the negative effects will have higher ranks than the positives.
Value
- The validation results for all 12 methods