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microclass (version 1.2)

Methods for Taxonomic Classification of Prokaryotes

Description

Functions for assigning 16S sequence data to a taxonomic level in the tree-of-life for prokaryotes.

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Version

Install

install.packages('microclass')

Monthly Downloads

181

Version

1.2

License

GPL (>= 2)

Maintainer

Lars Snipen

Last Published

August 28th, 2020

Functions in microclass (1.2)

multinomClassify

Classifying with a Multinomial model
multinomTrain

Training multinomial model
rdpClassify

Classifying with the RDP classifier
rdpTrain

Training the RDP classifier
taxMachine

Classifying 16S sequences
blastDbase16S

Building a BLAST database
setParallel

Set number of parallel threads
small.16S

A small example data set
KmerCount

K-mer counting
microclass-package

Methods for 16S based taxonomic classification of prokaryotes
blastClassify16S

Classifying using BLAST