micropan (version 1.0)

setLeafAttributes: Setting leaf attributes

Description

Function used to set leaf attributes in a pan-genome tree.

Usage

setLeafAttributes(node, lab.names, lab.col, lab.cex)
branchPos(mergeMatrix, ordering)

Arguments

node

The dendrogram node.

lab.names

Vector of node labels.

lab.col

Vector of node label colors.

lab.cex

Scaling of label fontsize.

mergeMatrix

Matrix of merged brances, see hclust for details.

ordering

Order of merged brances, see hclust for details.

Details

These functions are used by panTree. setLeafAttributes is used in a call to dendrapply in order to set leaf attributes in the dendrogram. branchPos and clusterSignature are used to add bootstrap-values to the pan-genome tree. You would never call these functions explicitly.

See Also

panTree.

Examples

# You should not call these functions explicitly.