minfi (version 1.18.4)

ratioConvert-methods: Converting methylation signals to ratios (Beta or M-values)

Description

Converting methylation data from methylation and unmethylation channels, to ratios (Beta and M-values).

Usage

"ratioConvert"(object, what = c("beta", "M", "both"), keepCN = TRUE, ...)
"ratioConvert"(object, what = c("beta", "M", "both"), keepCN = TRUE, ...)

Arguments

object

Either a MethylSet, or a GenomicRatioSet.

what

Which ratios should be computed and stored?

keepCN

A logical, should compy number values be computed and stored in the object?

...

Passed to getBeta, getM methods.

See Also

RatioSet or codeGenomicRatioSet for the output object and MethylSet or codeGenomicMethylSet for the input object.