products

A set of stoichiometric reaction with the following characteristics:<ul>
<li>Arrows symbols must be given in the form <code>'=&gt;'</code> or <code>'&lt;=&gt;'</code></li>
<li>Inverse arrow symbols <code>'&lt;='</code> or other types as: <code>'--&gt;'</code>, <code>'&lt;==&gt;'</code>, <code>'-&gt;'</code> will not be parsed and will lead to errors.</li>
<li>Arrow symbols and plus signs (<code>+</code>) must be surrounded by a space character</li>
<li>Stoichiometric coefficients must be surrounded by a space character and not by parentheses.</li>
<li>Each metabolite must have only one stoichiometric coefficient, substituents must be joined to metabolite name by a hyphen (<code>-</code>) symbol.</li>
<li>Exchange reactions have only one metabolite before arrow symbol</li>
<li>Compartments must be given between square brackets ([compartment]) joined at the end of metabolite name</li>
</ul>Some examples of valid stoichiometric reactions are:<ul>
<li><code>H2O[c] + Urea-1-Carboxylate[c] &lt;=&gt; 2 CO2[c] + 2 NH3[c]</code></li>
<li><code>ADP[c] + Phosphoenolpyruvate[c] =&gt; ATP[c] + Pyruvate[c]</code></li>
<li><code>CO2[c] &lt;=&gt; </code></li>
</ul>

reactionList

This function identifies the products for a set of stoichometric reactions.

For a given set of stoichiometric reactions, this package
evaluates the mass and charge balance, extracts all reactants, products, orphan
metabolites, metabolite names and compartments. Also are included some options
to characterize and write models in TSV and SBML formats.

products: Identify the products of a stoichometric reaction

Description

Usage

Arguments

Value