print.summary.lmm: Summarizing Linear Model Fits

Description

summary method for class "lmm".

Usage

# S3 method for summary.lmm
print(x, digits = max(3, getOption("digits") - 3),
      symbolic.cor = x$symbolic.cor,
      signif.stars = getOption("show.signif.stars"), ...)

Value

The function summary.lm computes and returns a list of summary statistics of the fitted linear model given in object, using the components (list elements) "call" and "terms"

from its argument, plus

residuals: the weighted residuals, the usual residuals rescaled by the square root of the weights specified in the call to lm.
coefficients: a $p \times 4$ matrix with columns for the estimated coefficient, its standard error, t-statistic and corresponding (two-sided) p-value. Aliased coefficients are omitted.
aliased: named logical vector showing if the original coefficients are aliased.
sigma: the square root of the estimated variance of the random error $$\hat\sigma^2 = \frac{1}{n-p}\sum_i{w_i R_i^2},$$ where $R_i$ is the $i$-th residual, residuals[i].
df: degrees of freedom, a 3-vector $(p, n-p, p*)$, the last being the number of non-aliased coefficients.
fstatistic: (for models including non-intercept terms) a 3-vector with the value of the F-statistic with its numerator and denominator degrees of freedom.
r.squared: $R^2$, the ‘fraction of variance explained by the model’, $$R^2 = 1 - \frac{\sum_i{R_i^2}}{\sum_i(y_i- y^*)^2},$$ where $y^*$ is the mean of $y_i$ if there is an intercept and zero otherwise.
adj.r.squared: the above $R^2$ statistic ‘adjusted’, penalizing for higher $p$.
cov.unscaled: a $p \times p$ matrix of (unscaled) covariances of the $\hat\beta_j$, $j=1, \dots, p$.
correlation: the correlation matrix corresponding to the above cov.unscaled, if correlation = TRUE is specified.
symbolic.cor: (only if correlation is true.) The value of the argument symbolic.cor.
na.action: from object, if present there.

Arguments

x: an object of class "summary.lmm", usually, a result of a call to summary.lmm.
digits: the number of significant digits to use when printing.
symbolic.cor: logical. If TRUE, print the correlations in a symbolic form (see symnum) rather than as numbers.
signif.stars: logical. If TRUE, ‘significance stars’ are printed for each coefficient.
...: further arguments passed to or from other methods.

Details

This adaptation of print.summary.lm from package stats slightly alters the output to better conform with text-book notation.

print.summary.lm tries to be smart about formatting the coefficients, standard errors, etc. and additionally gives ‘significance stars’ if signif.stars is TRUE.

Correlations are printed to two decimal places (or symbolically): to see the actual correlations print summary(object)$correlation directly.

Examples

Run this code

ctl <- c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
trt <- c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
group <- gl(2,10,20, labels=c("Ctl","Trt"))
weight <- c(ctl, trt)
sld90 <- summary(lm.D90 <- lm(weight ~ group -1))# omitting intercept
sld90

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