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mixmeta: an Extended Mixed-Effects Modelling Framework for Meta-Analysis

The package consists of a collection of functions to perform various meta-analytical models within a unified mixed-effects framework, including standard univariate fixed and random-effects meta-analysis and meta-regression, and non-standard extensions such as multivariate, multilevel, longitudinal, and dose-response models. The methodology is illustrated in detail in the article by Sera et al (see below).

Info on the mixmeta package

The package mixmeta is available on the Comprehensive R Archive Network (CRAN), with info at the related web page (https://cran.r-project.org/package=mixmeta). A development website is available on GitHub (https://github.com/gasparrini/mixmeta).

For a short summary of the functionalities of this package, refer to the main help page by typing:

help(package="mixmeta")

in R after installation (see below).

Installation

The last version officially released on CRAN can be installed directly within R by typing:

install.packages("mixmeta")

R code in published articles

Peer-reviewed articles and documents provide R code illustrating methodological developments of mixmeta or replicating substantive results using this package. An updated version of the code will be available the GitHub (https://github.com/gasparrini) or personal web page (http://www.ag-myresearch.com) of the package maintainer.

References:

Sera F, Armstrong B, Blangiardo M, Gasparrini A. An extended mixed-effects framework for meta-analysis. Statistics in Medicine. 2019;38(29):5429-5444 [freely available here]

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Install

install.packages('mixmeta')

Monthly Downloads

1,395

Version

1.2.0

License

GPL (>= 2)

Issues

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Last Published

October 16th, 2021

Functions in mixmeta (1.2.0)

fibrinogen

Fibrinogen Studies Collaboration
alcohol

Alcohol Intake and Colorectal Cancer
bcg

Efficacy of BCG Vaccine in the Prevention of Tuberculosis
dbs

Deep-Brain Stimulation for Patients with Parkinson's Disease
berkey98

Five Published Trials on Periodontal Disease
gliomas

Randomized Trials on Therapies for Malignant Gliomas
bdiagMat

Block-Diagonal Expansion of a List of Matrices
blup

Best Linear Unbiased Predictions
coef.mixmeta

Extract Coefficients and (Co)Variance Matrix from mixmeta Objects
blup.mixmeta

Best Linear Unbiased Predictions from mixmeta Models
inputcov

Input (Co)Variance Matrices
inputna

Input Missing Values
mixmeta-package

An Extended Mixed-Effects Framework for Meta-Analysis
logLik.mixmeta

Extract Log-Likelihood from mixmeta Objects
mixmeta

Fitting Standard and Extended Meta-Analysis and Meta-Regression Models
mixmeta.control

Ancillary Parameters for Controlling the Fit in mixmeta Models
mixmeta.ml

ML and REML Estimators for mixmeta Models
mixmeta.fixed

Fixed-Effects Estimator for mixmeta Models
mixmeta.mm

Method of Moments Estimator for mixmeta Models
hsls

High School Longitudinal Study
hyp

Ten Studies Assessing an Hypertension Treatment
mixmetaCovStruct

(Co)variance Structures for mixmeta Models
ml.igls

IGLS and RIGLS Iterative Algorithms for mixmeta Models
mixmetaObject

mixmeta Objects
ml.loglik.fn

Likelihood Functions for mixmeta Models
mixmeta.vc

Variance Components Estimator for mixmeta Models
vechMat

Vectorization and Expansion of Symmetric Matrices
smoking

Meta-Analysis of Interventions to Promote Smoking Cessation
summary.mixmeta

Summarizing mixmeta Models
terms.mixmeta

Extract Model Terms from mixmeta Objects
mixmetaFormula

Formulae in mixmeta Models
school

Studies on Modified School Calendar and Student Achievement
qtest.mixmeta

Cochran Q Test of Heterogeneity for mixmeta Models
model.frame.mixmeta

Extract Model Frame and Design Matrix from mixmeta Objects
ml.newton

Quasi-Newton Iterative Algorithms for mixmeta Models
na.omit.data.frame.mixmeta

Handling Missing Values in mixmeta Models
p53

Mutant p53 Gene and Squamous Cell Carcinoma
mixmetaSim

Simulating Responses for mixmeta Models
predict.mixmeta

Predicted Values from mixmeta Models
qtest

Cochran Q Test of Heterogeneity
thrombolytic

Randomized Trials of Thrombolytic Therapy