mlxR (version 4.2.0)

pkmodel: Easy simulation of PK models Easy simulation of basic PK models See http://simulx.webpopix.org/mlxr/pkmodel/ for more details.

Description

Easy simulation of PK models

Easy simulation of basic PK models

See http://simulx.webpopix.org/mlxr/pkmodel/ for more details.

Usage

pkmodel(time, treatment, parameter)

Arguments

time

a vector

treatment

a list with fields

• time : a vector of input times,

• amount : a scalar or a vector of amounts,

• rate : a scalar or a vector of infusion rates (default=Inf),

• tinf : a scalar or a vector of infusion times (default=0),

parameter

vector of parameters with their names and values

Examples

# NOT RUN {
   
# }
# NOT RUN {
  adm <- list(time=c(2,14,20), amount=40)
  p   <- c(V=8, Cl=0.5,k12=0.3, k21=0.2)
  t   <- seq(0, 30, by=0.1)
  
  res   <- pkmodel(time = t, treatment = adm, parameter = p)
  
  print(ggplot(data=res, aes(x=time, y=cc)) + geom_line(size=1) +
    xlab("time (h)") + ylab("concentration (mg/L)"))
  
  adm <- list(time = c(1,23,37,45), amount = c(1,0.5,2,0.3))
  p <- c(Mtt=5, Ktr=1, ka=0.5, V=10, Vm=1, Km=0.6, p=0.5)
  t <- seq(0, 80, by=0.1)
  
  res <- pkmodel(t,adm,p)
  
  print(ggplot(data=res, aes(x=time, y=cc)) + geom_line(size=1) +
    xlab("time (h)") + ylab("concentration (mg/L)"))
  
  adm <- list( time = 2, amount = 40)
  
  p <- inlineDataFrame("
  id   ka   V    Cl
  1   0.5   4     1
  2     1   6     1
  3   1.5   6   1.5
  ")
  
  t <- seq(0, 30, by=0.1)
  
  res <- pkmodel(t,adm,p)
  
  print(ggplot(data=res, aes(x=time, y=cc, colour=id)) + geom_line(size=1) +
    xlab("time (h)") + ylab("concentration (mg/L)"))   
  adm <- list(time=seq(2, 100, by=24), amount=40, rate=5)
  p <- c(V=8, Cl=0.5, k12=0.3, k21=0.2, ke0=0.2)
  t <- seq(0, 50, by=0.1)
  
  res <- pkmodel(t,adm,p)
  
  if( require("reshape2") ){
    r <- melt(res, id='time', variable.name='c')
    print(ggplot(r, aes(time,value)) + geom_line(aes(colour = c),size=1) +
            ylab('concentration') + guides(colour=guide_legend(title=NULL)) +
            theme(legend.position=c(.9, .8)))
  } 
# }