Methods for color labeling, calculation of eigengenes, merging of closely related modules.
| Package: | moduleColor |
| Version: | 1.08-3 |
| Date: | 2014-11-25 |
| Depends: | R, stats, impute, grDevices, dynamicTreeCut |
| ZipData: | no |
| License: | GPL version 2 or newer |
| URL: | http://www.genetics.ucla.edu/labs/horvath/CoexpressionNetwork/BranchCutting/ |
Index:
checkSets Retrieve basic sizes of a group of datasets.
collectGarbage Iterative garbage collection.
consensusMEDissimilarity
Consensus dissimilarity of module eigengenes.
consensusOrderMEs Put close eigenvectors next to each other in
several sets.
fixDataStructure Put single-set data into a form useful for
multiset calculations.
labels2colors Convert numerical labels to colors.
mergeCloseModules Merge close modules of gene expression data.
moduleColor-package Basic module functions.
moduleColor.getMEprefix Get the prefix used to label module eigengenes.
moduleColor.version Returns the version number of the package.
moduleColor.revisionDate
Returns the revision date of the package.
moduleEigengenes Calculate module eigengenes.
moduleNumber Fixed-height cut of a dendrogram.
multiSetMEs Calculate module eigengenes.
normalizeLabels Transform numerical labels into normal order.
orderMEs Put close eigenvectors next to each other
plotHclustColors Plot color bars corresponding to modules
removeGreyME Remove the grey module eigengene from given eigengenes.
standardColors Colors this library uses for labeling modules.