mogsa (version 1.6.4)

prepMsigDB: Conver gmt format file to a list

Description

Convert a gmt file (Could be downloaded from MSigDB) to a list of gene sets information.

Usage

prepMsigDB(file)

Arguments

file

The directory and file name of the gmt file.

Value

This function returns an object of list containing gene set information, which could be further processed by function "prepSupMoa" to convert to the object that can be used as input of "sup.moa" or "mogsa".

See Also

See Also as prepGraphite and prepSupMoa.

Examples

	# not run
	dir <- system.file(package = "mogsa")
	preGS <- prepMsigDB(file=paste(dir, 
		"/extdata/example_msigdb_data.gmt.gz", sep = ""))