buildMgsFinal

: a vector of genes to be projected onto mgs or a list of genebags, default = NULL.

genebag

mgs.cat

mgs.taxo

:  the data profile matrix to extract the profiles

profiles

: if TRUE the connectivity of a group is to be computed and ordered, default = TRUE.

conn

: print detailled information on progress, default = FALSE.

silent

: filtering based on percentage of prevalence to avoid noise for no signal samples by
computeFilteredVectors.

filt


This function will take a vector of genes (to be transformed into a list of genebags)
     or a list of genebags and will extract the profiles. Next genes well be ordered by connectivity
     which is to be computed for each group and the 50 most connected are selected to consitute the
     marker genes. These will be then used to compute the mean vectors. A final object containing all
     this information along with taxonomical annotation will be returned


'MetaOMineR' suite is a set of R packages that offers many functions and modules needed for the analyses
of quantitative metagenomics data. 'momr' is the core package and contains routines for biomarker identification and exploration.
Developed since the beginning of field, 'momr' has evolved and is structured around the different modules
such as preprocessing, analysis, vizualisation, etc. See package help for more information.

buildMgsFinal: buildMgsFinal @date December 20th 2013

Description

Usage

Arguments

Value

Details