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momr (version 1.1)

computeFilteredVectors: computeFilteredVectors

Description

filters and computes verctors based on gene profiles from a single matrix or a list of matrix profiles

Usage

computeFilteredVectors(profile, type = "mean", filt = 0, debug = FALSE)

Arguments

profile
: list of (or unique) matrix profiles
type
: vectorisation method, vectors are calculated from the mean, median or sum of a given list of genes; default type="mean" otherwise it will be "median" or "sum"
filt
: filtering threshold in and sparse values put to 0 default filt= 0, no filtering
debug
: default is FALSE, when TRUE information on advancement is printed

Value

a filtered vector or a matrix of filtered vectors

Details

computeFilteredVectors