connectivity

: a profile matrix. This data is used to compute correlations.

prof

: the correlation method, default = pearson.

method

: default 0, if >0 than this threshold will be applied to compute a hard threholded connectivity.

: default = FALSE, if TRUE and when th > 0, the connectivity is computed as the soft threholded, sum of correlations
above the threshold

soft


This function computes the intra-row correlation and applied a threshold to compute the connections of each row.
A connectivity vector is returned.


'MetaOMineR' suite is a set of R packages that offers many functions and modules needed for the analyses
of quantitative metagenomics data. 'momr' is the core package and contains routines for biomarker identification and exploration.
Developed since the beginning of field, 'momr' has evolved and is structured around the different modules
such as preprocessing, analysis, vizualisation, etc. See package help for more information.

connectivity: connectivity

Description

Usage

Arguments

Value

Details