downsizeGC.all

: raw read count matrix with gene_ids as rownames

data

: default seq(1E06,11E06,1E06), the downsizing levels number of reads to be selected randomly.

levels

: default 10, the number of times the drawing is performed. Usually 30 or 10 to speed things out

repetitions

: default is FALSE prints the status of downsizing

silent


This function takes a matrix with raw reads counts and computes the number of genes at different
downsizing levels a given number of times. This is similar to the downsizeGC function but for optimization purposes
it downsizes at different thresholds all together


'MetaOMineR' suite is a set of R packages that offers many functions and modules needed for the analyses
of quantitative metagenomics data. 'momr' is the core package and contains routines for biomarker identification and exploration.
Developed since the beginning of field, 'momr' has evolved and is structured around the different modules
such as preprocessing, analysis, vizualisation, etc. See package help for more information.

downsizeGC.all: downsizeGC.all

Description

Usage

Arguments

Value

Details