Learn R Programming

monitoR (version 1.2)

Acoustic Template Detection in R

Description

Acoustic template detection and monitoring database interface. Create, modify, save, and use templates for detection of animal vocalizations. View, verify, and extract results. Upload a MySQL schema to a existing instance, manage survey metadata, write and read templates and detections locally or to the database.

Copy Link

Version

Install

install.packages('monitoR')

Monthly Downloads

605

Version

1.2

License

GPL-2

Issues

Pull Requests

Stars

Forks

Repository

https://github.com/jonkatz2/monitor

Maintainer

Sasha D. Hafner

Last Published

April 11th, 2025

Functions in monitoR (1.2)

Resample Wave objects

TemplateList-class

Class "TemplateList"

Black-Throated Green Warbler (Setophaga virens) Song

compareTemplates

Compare Performance of Templates

Class "Template"

Summarize/Archive Manually Derived Sound Events

combineTemplates

Combine Acoustic Template Lists

Extract Shorter Wave Objects from other Wave Objects

Batch Template Detection

detectionList-class

Class "detectionList"

Summarize/Archive Song Events

Evaluate Detected Events with Known Event Sources and Times

Retrieve Card-Recorder ID Values or Survey Names from a Database

dbDownloadResult

Create detectionList Objects from Data Stored in a Database

Upload Spectrogram Annotations to an Acoustics Database

dbDownloadTemplate

Retrieve templates from an acoustics database

Upload Survey Metadata to an Acoustics Database

dbUploadTemplate

Upload Acoustic Templates to a Database

Upload Detection Results to an Acoustics Database

Upload a MySQL Database Schema to Create Tables in an Acoustics Database

Extract Detections or Peaks from a detectionList Object

extract-methods

Indexing (Extraction) Methods for monitoR Package

Copy and Rename Sound Files from Portable Media

Ovenbird (Seiurus aurocapilla) Song

Extract a Template List

Find Score Peaks and Detections in a templateScores Object

Extract Short Surveys from Longer mp3 Recordings

monitoR Internal Functions

Sample Acoustic Survey (Short)

Color Vectors for Spectrograms

Make an Acoustic Template

Methods for the show and summary Functions

Automated Acoustic Monitoring--overview and examples

View or Verify Detections or Peaks

Methods for the plot Function

templateComment

Query or Set Template Cutoffs

Read Acoustic Templates from a Local Disk

Annotations for survey

Condense Detections or Peaks from Multiple Templates

Read MP3 Files into a Wave Object

Song clip path of Templates

templateScores-class

Class "templateScores"

Query or Set Template Cutoffs

Interactively View and Annotate Spectrograms

Write Acoustic Templates to Text Files

templateMatching

Calculate Spectrogram Template Matching Scores

Names of Templates