orderCells: Orders cells according to progress through a learned biological process.
Description
Orders cells according to progress through a learned biological process.Usage
orderCells(cds, num_paths = 1, reverse = FALSE, root_cell = NULL)
Arguments
cds
the CellDataSet upon which to perform this operation
num_paths
the number of end-point cell states to allow in the biological process.
reverse
whether to reverse the beginning and end points of the learned biological process.
root_cell
the name of a cell to use as the root of the ordering tree.
Value
- an updated CellDataSet object, in which phenoData contains values for State and Pseudotime for each cell