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monocle (version 1.6.2)

reducedDimS: Retrieves the coordinates of each cell in the reduced-dimensionality space generated by calls to reduceDimension.

Description

Reducing the dimensionality of the expression data is a core step in the Monocle workflow. After you call reduceDimension(), this function will return the new coordinates of your cells in the reduced space.

Usage

reducedDimS(cds)

Arguments

cds
A CellDataSet object.

Value

  • A matrix, where rows are cell coordinates and columns correspond to dimensions of the reduced space.

Examples

Run this code
data(HSMM)
S <- reducedDimS(HSMM)

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