setOrderingFilter

the CellDataSet upon which to perform this operation

a vector of feature ids (from the CellDataSet's featureData) used for ordering cells

ordering_genes

Sets the features (e.g. genes) to be used for ordering cells in pseudotime.

Monocle performs differential expression and time-series analysis for single-cell expression experiments. It orders individual cells according to progress through a biological process, without knowing ahead of time which genes define progress through that process. Monocle also performs differential expression analysis, clustering, visualization, and other useful tasks on single cell expression data.  It is designed to work with RNA-Seq and qPCR data, but could be used with other types as well.

setOrderingFilter: Sets the features (e.g. genes) to be used for ordering cells in pseudotime.

Description

Usage

Arguments

Value