calculateLW

The cell_data_set object where the neighbors list is calculated
from

The maximum number of nearest neighbors to compute

A logic flag that determines whether or not to print
execution details

verbose

This function first retrieves the association from each cell to
any principal points, then builds a kNN graph for all cells
and removes edges that connected between groups that disconnected in the
corresponding principal graph and finally uses this kNN graph to calculate a
global Moran's I and get the p-value

internal

Monocle 3 performs clustering, differential expression and
trajectory analysis for single-cell expression experiments. It orders
individual cells according to progress through a biological process,
without knowing ahead of time which genes define progress through that
process. Monocle 3 also performs differential expression analysis,
clustering, visualization, and other useful tasks on single-cell expression
data.  It is designed to work with RNA-Seq data, but could be used with
other types as well.

calculateLW: Function to calculate the neighbors list with spatial weights for the chosen coding scheme from a cell dataset object

Description

Usage

Arguments