combine_cds

List of cds objects to be combined.

cds_list

Logical indicating what to do if there is a mismatch
in the gene sets of the CDSs. If TRUE, all genes are kept and cells from
CDSs missing a given gene will be filled in with zeroes. If FALSE, only
the genes in common among all of the CDSs will be kept. Default is TRUE.

keep_all_genes

Logical indicating whether all of the cell IDs
across all of the CDSs are unique. If FALSE, the CDS name is appended to
each cell ID to prevent collisions. Default is FALSE.

cell_names_unique

A string to be the column name for the colData column
that indicates which original cds the cell derives from. Default is
"sample".

sample_col_name

This function will combine a list of cell_data_set objects into a new
cell_data_set object.

Monocle 3 performs clustering, differential expression and
trajectory analysis for single-cell expression experiments. It orders
individual cells according to progress through a biological process,
without knowing ahead of time which genes define progress through that
process. Monocle 3 also performs differential expression analysis,
clustering, visualization, and other useful tasks on single-cell expression
data.  It is designed to work with RNA-Seq data, but could be used with
other types as well.

combine_cds: Combine a list of cell_data_set objects

Description

Usage

Arguments

Value