estimate_size_factors

A logic flag to determine whether or not the expression
value should be rounded

round_exprs

A string to specify the size factor calculation approach.
Options are "mean-geometric-mean-total" (default),
"mean-geometric-mean-log-total".

method

Function to calculate size factors for single-cell RNA-seq data

Monocle 3 performs clustering, differential expression and
trajectory analysis for single-cell expression experiments. It orders
individual cells according to progress through a biological process,
without knowing ahead of time which genes define progress through that
process. Monocle 3 also performs differential expression analysis,
clustering, visualization, and other useful tasks on single-cell expression
data.  It is designed to work with RNA-Seq data, but could be used with
other types as well.

estimate_size_factors: Function to calculate size factors for single-cell RNA-seq data

Description

Usage

Arguments

Value