pseudotime

<p>Reduced dimension to extract pseudotime for.</p>

reduction_method

<p>Generic to extract pseudotime from CDS object</p>

Monocle 3 performs clustering, differential expression and
trajectory analysis for single-cell expression experiments. It orders
individual cells according to progress through a biological process,
without knowing ahead of time which genes define progress through that
process. Monocle 3 also performs differential expression analysis,
clustering, visualization, and other useful tasks on single-cell expression
data.  It is designed to work with RNA-Seq data, but could be used with
other types as well.

Cole Trapnell

pseudotime: Generic to extract pseudotime from CDS object

Description

Usage

Arguments