mooplot (version 0.1.0)

eafplot: Plot the Empirical Attainment Function for two objectives

Description

Computes and plots the Empirical Attainment Function (EAF), either as attainment surfaces for certain percentiles or as points.

Usage

eafplot(x, ...)
# S3 method for default
eafplot(
  x,
  sets,
  groups = NULL,
  percentiles = c(0, 50, 100),
  attsurfs = NULL,
  maximise = c(FALSE, FALSE),
  type = "point",
  xlab = NULL,
  ylab = NULL,
  xlim = NULL,
  ylim = NULL,
  log = "",
  col = NULL,
  lty = c("dashed", "solid", "solid", "solid", "dashed"),
  lwd = 1.75,
  pch = NA,
  cex.pch = par("cex"),
  las = par("las"),
  legend.pos = paste0(ifelse(maximise[1L], "bottom", "top"), ifelse(rep_len(maximise,
    2L)[2L], "left", "right")),
  legend.txt = NULL,
  extra.points = NULL,
  extra.legend = NULL,
  extra.pch = 4:25,
  extra.lwd = 0.5,
  extra.lty = NA,
  extra.col = "black",
  xaxis.side = "below",
  yaxis.side = "left",
  axes = TRUE,
  sci.notation = FALSE,
  ...
)
# S3 method for list
eafplot(x, ...)

Value

The attainment surfaces computed (invisibly).

Arguments

x

Either a matrix of data values, or a data frame, or a list of data frames of exactly three columns.

...

Other graphical parameters to plot.default().

sets

Vector indicating which set each point belongs to. Will be coerced to a factor.

groups

This may be used to plot data for different algorithms on the same plot. Will be coerced to a factor.

percentiles

(numeric())
Vector indicating which percentile should be plot. The default is to plot only the median attainment curve.

attsurfs

TODO

maximise

(logical()|logical(1))
Whether the objectives must be maximised instead of minimised. Either a single logical value that applies to all objectives or a vector of logical values, with one value per objective.

type

("point"|"area")
Type of plot.

xlab, ylab, xlim, ylim, log, col, lty, lwd, pch, cex.pch, las

Graphical parameters, see plot.default().

legend.pos

(character(1)|list()|data.frame())
Position of the legend. This may be xy coordinates or a keyword ("bottomright", "bottom", "bottomleft", "left", "topleft", "top", "topright", "right", "center"). See Details in legend(). A value of "none" hides the legend.

legend.txt

(expression()|character())
Character or expression vector to appear in the legend. If NULL, appropriate labels will be generated.

extra.points

A list of matrices or data.frames with two-columns. Each element of the list defines a set of points, or lines if one of the columns is NA.

extra.legend

A character vector providing labels for the groups of points.

extra.pch, extra.lwd, extra.lty, extra.col

Control the graphical aspect of the points. See points() and lines().

xaxis.side

("below"|"above")
On which side the x-axis is drawn. See axis().

yaxis.side

("left"|"right")
On which side the y-axis is drawn. See axis().

axes

(logical(1))
A logical value indicating whether both axes should be drawn on the plot.

sci.notation

(logical(1))
Generate prettier labels

Methods (by class)

• eafplot(default): Main function

• eafplot(list): List interface for lists of data.frames or matrices

Details

This function can be used to plot random sets of points like those obtained by different runs of biobjective stochastic optimisation algorithms LopPaqStu09emaamoocore. An EAF curve represents the boundary separating points that are known to be attainable (that is, dominated in Pareto sense) in at least a fraction (quantile) of the runs from those that are not Grunert01moocore. The median EAF represents the curve where the fraction of attainable points is 50%. In single objective optimisation the function can be used to plot the profile of solution quality over time of a collection of runs of a stochastic optimizer LopVerDreDoe2025mooplot.

References

See Also

moocore::read_datasets() eafdiffplot() pdf_crop()

Examples

# \donttest{
extdata_path <- system.file(package = "moocore", "extdata")
A1 <- read_datasets(file.path(extdata_path, "ALG_1_dat.xz"))
A2 <- read_datasets(file.path(extdata_path, "ALG_2_dat.xz"))
eafplot(A1, percentiles = 50, sci.notation = TRUE, cex.axis=0.6)
# The attainment surfaces are returned invisibly.
attsurfs <- eafplot(list(A1 = A1, A2 = A2), percentiles = 50)
str(attsurfs)

## Save as a PDF file.
# dev.copy2pdf(file = "eaf.pdf", onefile = TRUE, width = 5, height = 4)
# }

## Using extra.points
# \donttest{
data(HybridGA, package="moocore")
data(SPEA2relativeVanzyl, package="moocore")
eafplot(SPEA2relativeVanzyl, percentiles = c(25, 50, 75),
        xlab = expression(C[E]), ylab = "Total switches", xlim = c(320, 400),
        extra.points = HybridGA$vanzyl, extra.legend = "Hybrid GA")

data(SPEA2relativeRichmond, package="moocore")
eafplot (SPEA2relativeRichmond, percentiles = c(25, 50, 75),
         xlab = expression(C[E]), ylab = "Total switches",
         xlim = c(90, 140), ylim = c(0, 25),
         extra.points = HybridGA$richmond, extra.lty = "dashed",
         extra.legend = "Hybrid GA")

eafplot (SPEA2relativeRichmond, percentiles = c(25, 50, 75),
         xlab = expression(C[E]), ylab = "Total switches",
         xlim = c(90, 140), ylim = c(0, 25), type = "area",
         extra.points = HybridGA$richmond, extra.lty = "dashed",
         extra.legend = "Hybrid GA", legend.pos = "bottomright")

data(SPEA2minstoptimeRichmond, package="moocore")
SPEA2minstoptimeRichmond[,2] <- SPEA2minstoptimeRichmond[,2] / 60
eafplot (SPEA2minstoptimeRichmond, xlab = expression(C[E]),
         ylab = "Minimum idle time (minutes)", maximise = c(FALSE, TRUE),
         las = 1, log = "y", main = "SPEA2 (Richmond)",
         legend.pos = "bottomright")

data(tpls50x20_1_MWT, package="moocore")
eafplot(tpls50x20_1_MWT[, c(2,3)], sets = tpls50x20_1_MWT[,4L],
        groups = tpls50x20_1_MWT[["algorithm"]])
# }