survData_join

This function joins two data sets, one for exposure measurements, the other
for survival measurements, into a single dataframe that can be used
with the <code>survData</code> function.

Advanced methods for a valuable quantitative environmental risk
assessment using Bayesian inference of survival and reproduction Data. Among
others, it facilitates Bayesian inference of the general unified
threshold model of survival (GUTS). See our companion paper
Baudrot and Charles (2021) <doi:10.21105/joss.03200>,
as well as complementary details in Baudrot et al. (2018)
<doi:10.1021/acs.est.7b05464> and Delignette-Muller et al.
(2017) <doi:10.1021/acs.est.6b05326>.

Virgile Baudrot

morse

Modelling Reproduction and Survival Data in Ecotoxicology

Sandrine Charles

Marie Laure Delignette-Muller

Wandrille Duchemin

Benoit Goussen

Nils Kehrein

Guillaume Kon-Kam-King

Christelle Lopes

Philippe Ruiz

Alexander Singer

Philippe Veber

survData_join function

<dl><dt>x</dt>
<dd>a <code>data.frame</code> containing the following three columns:<ul>
<li><code>replicate</code>: a vector of class <code>integer</code> or <code>factor</code> for replicate
identification</li>
<li><code>time</code>: a vector of class <code>integer</code> with time points, min value must be 0</li>
<li><code>Nsurv</code>: a vector of class <code>integer</code> providing the number of
alive individuals at some or all time points for each replicate</li>
</ul></dd>
<dt>y</dt>
<dd>a <code>data.frame</code> containing the following three columns:<ul>
<li><code>replicate</code>: a vector of class <code>integer</code> or factor for replicate
identification</li>
<li><code>time</code>: a vector of class <code>integer</code> with time points, min value must be 0</li>
<li><code>conc</code>: a vector of class <code>numeric</code> providing the concentration
 at some or all time points for each replicate</li>
</ul></dd></dl>

Arguments

Joins a concentration with a survival data set into an argument for 'survData'
when the concentration varies over time — survData_join

<dl>

<dt>x</dt>
<dd>a <code>data.frame</code> containing the following three columns:<ul>
<li><code>replicate</code>: a vector of class <code>integer</code> or <code>factor</code> for replicate
identification</li>
<li><code>time</code>: a vector of class <code>integer</code> with time points, min value must be 0</li>
<li><code>Nsurv</code>: a vector of class <code>integer</code> providing the number of
alive individuals at some or all time points for each replicate</li>
</ul></dd>


<dt>y</dt>
<dd>a <code>data.frame</code> containing the following three columns:<ul>
<li><code>replicate</code>: a vector of class <code>integer</code> or factor for replicate
identification</li>
<li><code>time</code>: a vector of class <code>integer</code> with time points, min value must be 0</li>
<li><code>conc</code>: a vector of class <code>numeric</code> providing the concentration
 at some or all time points for each replicate</li>
</ul></dd>

</dl>

Joins a concentration with a survival data set into an argument for 'survData'
when the concentration varies over time

survData_join: Joins a concentration with a survival data set into an argument for 'survData' when the concentration varies over time

Description

Usage

Value

Arguments