highlightCol

vector of any of the three kinds of R color specifications, 
    i.e., either a color name (as listed by <a href="/link/colors?package=motifStack&version=1.16.2&to=grDevices" rd-options="grDevices" data-mini-rdoc="grDevices::colors">colors</a>()), 
    a hexadecimal string of the form "#rrggbb" or "#rrggbbaa" (see <a href="/link/rgb?package=motifStack&version=1.16.2&to=grDevices" rd-options="grDevices" data-mini-rdoc="grDevices::rgb">rgb</a>), 
    or a positive integer i meaning <a href="/link/palette?package=motifStack&version=1.16.2&to=grDevices" rd-options="grDevices" data-mini-rdoc="grDevices::palette">palette</a>()[i].

alpha

An alpha transparency value can be specified to a color, in order to get better
color for background.

misc

The motifStack package is designed for graphic 
             representation of multiple motifs with different similarity 
             scores. It works with both DNA/RNA sequence motif and amino 
             acid sequence motif. In addition, it provides the flexibility 
             for users to customize the graphic parameters such as the 
             font type and symbol colors.

Jianhong Ou

motifStack

Plot stacked logos for single or multiple DNA, RNA and amino
        acid sequence

highlightCol function

vector of any of the three kinds of R color specifications, 
    i.e., either a color name (as listed by <a href="colors" rd-options="grDevices">colors</a>()), 
    a hexadecimal string of the form "#rrggbb" or "#rrggbbaa" (see <a href="rgb" rd-options="grDevices">rgb</a>), 
    or a positive integer i meaning <a href="palette" rd-options="grDevices">palette</a>()[i].

highlightCol: add alpha transparency value to a color

Description

Usage

Arguments

Value

Examples