parDef

Provides tools for animal movement modelling using hidden Markov
models. These include processing of tracking data, fitting hidden Markov models
to movement data, visualization of data and fitted model, decoding of the state
process, etc. <doi:10.1111/2041-210X.12578>.

Theo Michelot

moveHMM

Animal Movement Modelling using Hidden Markov Models

Roland Langrock

Toby Patterson

Brett McClintock

Eric Rexstad

parDef function

<dl><dt>stepDist</dt>
<dd>Name of the distribution of the step lengths.</dd>
<dt>angleDist</dt>
<dd>Name of the distribution of the turning angles.
Set to <code>"none"</code> if the angle distribution should not be estimated.</dd>
<dt>nbStates</dt>
<dd>Number of states of the HMM.</dd>
<dt>estAngleMean</dt>
<dd><code>TRUE</code> if the mean of the turning angles distribution is estimated,
<code>FALSE</code> otherwise.</dd>
<dt>zeroInflation</dt>
<dd><code>TRUE</code> if the step length distribution is inflated in zero.</dd></dl>

Arguments

Parameters definition — parDef

<dl>

<dt>stepDist</dt>
<dd>Name of the distribution of the step lengths.</dd>


<dt>angleDist</dt>
<dd>Name of the distribution of the turning angles.
Set to <code>"none"</code> if the angle distribution should not be estimated.</dd>


<dt>nbStates</dt>
<dd>Number of states of the HMM.</dd>


<dt>estAngleMean</dt>
<dd><code>TRUE</code> if the mean of the turning angles distribution is estimated,
<code>FALSE</code> otherwise.</dd>


<dt>zeroInflation</dt>
<dd><code>TRUE</code> if the step length distribution is inflated in zero.</dd>

</dl>

Parameters definition

parDef: Parameters definition

Description

Usage

Value

Arguments