mpMap (version 1.14)

plotlink.map: Plots linkage maps

Description

Plot linkage map (either as input object or as stored in mpcross object). Can also highlight QTL regions when used with qtlmap function.

Usage

plotlink.map(object, chr, max.dist, marker.names = TRUE, tick = FALSE, squash = TRUE, colqtl = "red", ...)

Arguments

object

Either mpcross or map object

chr

Chromosomes to plot

max.dist

Plotting paramters. See link.map.cross

marker.names

Whether to plot marker names

tick

Plotting parameters. See link.map.cross

squash

Plotting parameters. See link.map.cross

colqtl

Color to plot QTL regions. See qtlmap

...

Additional arguments

Value

Modification of link.map.cross function from wgaim to allow more general input objects and to highlight regions around QTL. If any markers are labelled "QTLx" then they will be plotted in a different color.

See Also

link.map.cross, qtlmap