multiblock (version 0.8.8.2)

jive: Joint and Individual Variation Explained - JIVE

Description

This is a wrapper for the r.jive::jive function for computing JIVE.

Usage

jive(X, ...)

Value

multiblock object including relevant scores and loadings. Relevant plotting functions: multiblock_plots

and result functions: multiblock_results.

Arguments

X

list of input blocks.

...

additional arguments for r.jive::jive.

Details

Jive performs a decomposition of the variation in two or more blocks into low-dimensional representations of individual and joint variation plus residual variation.

References

Lock, E., Hoadley, K., Marron, J., and Nobel, A. (2013) Joint and individual variation explained (JIVE) for integrated analysis of multiple data types. Ann Appl Stat, 7 (1), 523–542.

See Also

Overviews of available methods, multiblock, and methods organised by main structure: basic, unsupervised, asca, supervised and complex.

Examples

 # Too time consuming for testing
  data(candies)
  candyList <- lapply(1:nlevels(candies$candy),function(x)candies$assessment[candies$candy==x,])
  can.jive  <- jive(candyList)
  summary(can.jive)