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multic (version 0.4.3.1)

Quantitative Linkage Analysis Tools using the Variance Components Approach

Description

Calculate the polygenic and major gene models for quantitative trait linkage analysis using variance components approach. The 0.2.2 release includes bug fixes that allow 'multic' to run properly on 64-bit systems. The 0.3.0 release includes a fully implemented sw2mloci() function. As of 0.3.8, Splus version is no longer supported. Additional documentation and examples can be found in the inst directory.

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Version

Install

install.packages('multic')

Monthly Downloads

111

Version

0.4.3.1

License

GPL (>= 2) | file LICENSE

Maintainer

Pat Votruba

Last Published

January 29th, 2016

Functions in multic (0.4.3.1)

sw2mloci

Convert SimWalk IBD files into a single mloci.out.
multic.control

Set control parameters for multic
multic

Create a multic object
multic.object

a multic object
plotFamilyLods

Plot family contribution to peak LOD
non.user.level.objects

This function is not intended for user-level use.
phi2share

Convert a SOLAR-formatted phi2 file into a multic-formatted share.out file.
subsets

Choose Sets Of Size k From The n-Elements Of a Vector
addGE

Assess combinations of univariate multic objects
expand.multic

Create "bootstrapped" versions of mloci.out and share.out for multic
tRank

Empirical Normal Quantile transformation
summary.multic

Use print() on a multic object
solar2multic

Convert SOLAR-formatted output into multic-formatted mloci.out and share.out
expand.data

Create a "bootstrapped" version of a dataset to be used in multic.
plot.multic

Plot a multic object
solar2mloci

Convert a directory of SOLAR-formatted ibd and/or mibd files into a multic-formatted mloci.out
print.multic

Use print() on a multic object