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multimark

R package for capture-recapture analysis with multiple non-invasive marks

Installation instructions

CRAN release

The package is available at . To install it:

install.packages("multimark")

Install from Github

To install the latest (stable) version of the package from Github:

library(remotes)
install_github("bmcclintock/multimark")

To install the latest (unstable) version of the package from Github:

library(remotes)
install_github("bmcclintock/multimark@develop")

References

McClintock, B.T. (2015) multimark: an R package for analysis of capture–recapture data consisting of multiple “noninvasive” marks. Ecology and Evolution, 5(21), 4920-4931.

Maronde, L., McClintock, B.T., Breitenmoser, U., Zimmermann, F. (2020) Spatial capture–recapture with multiple noninvasive marks: An application to camera-trapping data of the European wildcat (Felis silvestris) using R package multimark. Ecology and Evolution, 10(24), 13968–13979.

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Version

Install

install.packages('multimark')

Monthly Downloads

460

Version

2.1.6

License

GPL-2

Maintainer

Brett T McClintock

Last Published

March 10th, 2023

Functions in multimark (2.1.6)

Fit open population survival models for ``traditional'' capture-mark-recapture data consisting of a single mark type

Calculate posterior capture and recapture probabilities

getprobsClosedSCR

Calculate posterior capture and recapture probabilities

Fit closed population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type

getdensityClosedSCR

Calculate population density estimates

Calculate posterior capture and survival probabilities

Fit spatial population abundance models for ``traditional'' capture-mark-recapture data consisting of a single mark type

Fit open population survival models for capture-mark-recapture data consisting of multiple non-invasive marks

Bobcat spatial capture-recapture data

Generate model inputs for fitting 'multimark' models

multimodelClosedSCR

Multimodel inference for 'multimark' spatial population abundance models

plotSpatialData

Plot spatial capture-mark-recapture data

multimarkClosed

Fit closed population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks

multimarkClosedSCR

Fit spatially-explicit population abundance models for capture-mark-recapture data consisting of multiple non-invasive marks

Multimodel inference for 'multimark' open population survival models

Generate model inputs for fitting spatial 'multimark' models

multimodelClosed

Multimodel inference for 'multimark' closed population abundance models

multimarkSCRsetup-class

Class "multimarkSCRsetup"

Simulate open population capture-mark-recapture data arising from multiple non-invasive marks

Simulate closed population capture-mark-recapture data arising from multiple non-invasive marks

multimarksetup-class

Class "multimarksetup"

simdataClosedSCR

Simulate spatially-explicit capture-mark-recapture data from a (demographically) closed population with multiple non-invasive marks