"multimarkSCRsetup"
A class of spatial 'mulitmark' model inputs
Enc.Mat
Object of class "matrix"
. The observed encounter histories (with rows corresponding to individuals and columns corresponding to sampling occasions).
data.type
Object of class "character"
. The encounter history data type ("never", "sometimes", or "always").
vAll.hists
Object of class "integer"
. An ordered vector containing all possible encounter histories in sequence.
Aprime
Object of class "sparseMatrix"
. Transpose of the A matrix mapping latent encounter histories to observed histories.
indBasis
Object of class "numeric"
.An ordered vector of the indices of the three encounter histories updated by each basis vector.
ncolbasis
Object of class "integer"
. The number of needed basis vectors.
knownx
Object of class "integer"
. Frequencies of known encounter histories.
C
Object of class "integer"
. Sampling occasion of first capture for each encounter history.
L
Object of class "integer"
. Sampling occasion of last capture for each encounter history.
naivex
Object of class "integer"
. ``Naive'' latent history frequencies assuming a one-to-one mapping with Enc.Mat
.
covs
Object of class "data.frame"
. Temporal covariates for detection probability (the number of rows in the data frame must equal the number of sampling occasions).
spatialInputs
Object of class "list"
. List is of length 4 containing trapCoords
and studyArea
after re-scaling coordinates based on maxscale
, as well as the original (not re-scaled) grid cell resolution (origCellRes
) and re-scaling range (Srange
).
Objects can be created by calls of the form processdata(Enc.Mat, ...)
or new("multimarkSCRsetup", ...)
.
No methods defined with class "multimarkSCRsetup".
Brett T. McClintock
processdataSCR
showClass("multimarkSCRsetup")
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