billing2016_suppfig4e: Mass spectrometry intensities by stem cell type and organelle

Description

This data was used to create Supplementary Figure 4e of Billing 2016 (see references).

Arguments

Format

A data frame with 81 rows and the following columns:

GeneName: A factor with three levels naming genes that have interesting properties.
Intensity: A numeric vector of positive intensities of proteins corresponding to the genes as determined by mass spectrometry.
StemCellType: A factor with three levels indicating the type of stem cell experimented on. "ESC" means embryonic stem cell; "ESC-MSC" means mesenchymal stem cell derived from an embryonic stem cell; "BM-MSC" means mesenchymal stem cell derived from bone marrow.
Organelle: The region of the cell experimented on. "CH" means chromatin, "Cyt" means cytosol, "Nuc" means nucleus.
Replicate: An integer specifying the experimental replicate.
Experiment: The interaction of StemCellType, Organelle and Replicate.

Details

A data frame of genes corresponding to protein intensities as measured by mass spectrometry proteomics experiments on embryonic and mesenchymal stem cells.

References

Billing AM, Ben Hamidane H, Dib SS, et al. Comprehensive transcriptomic and proteomic characterization of human mesenchymal stem cells reveals source specific cellular markers. Scientific Reports. 2016;6:21507. doi:10.1038/srep21507.

Article text available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4746666

Supplementary figures available at: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4746666/bin/srep21507-s1.pdf

Examples

Run this code

ggplot2::ggplot(billing2016_suppfig4e, ggplot2::aes(Experiment, Intensity)) +
  ggplot2::geom_bar(stat = "identity") +
  ggplot2::geom_vline(xintercept = seq(3.5, 24.5, 3), linetype = "dotted") +
  ggplot2::facet_wrap(~ GeneName) +
  ggplot2::xlab(NULL) +
  ggplot2::theme(axis.text.x = ggplot2::element_text(angle = 45, hjust = 1, size = 4))

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