Fits of multivariate evolutionary models on trees (with one or multiple selective regimes) and time-series dedicated to morphometrics or biometric continuous data with covariation. Testing for a phylogenetic signal in a multivariate dataset (including fossil and/or extant taxa), fitting linear models to high-dimensional multivariate comparative data, changes in rate or mode of evolution of continuous traits, simulating multivariate traits evolution, computing the likelihood of multivariate models, accounts for measurement errors and missing data, and other things...
| Package: | mvMORPH |
| Type: | Package |
| Version: | 1.1.0 |
| Date: | 2013-07-22 |
| License: | GPL (>=2.0) |
Clavel et al. (2015). mvMORPH: an R package for fitting multivariate evolutionary models to morphometric data. Methods in Ecology and Evolution, 6(11):1311-1319. doi: 10.1111/2041-210X.12420.
Clavel et al. (2018). A Penalized Likelihood framework for high-dimensional phylogenetic comparative methods and an application to new-world monkeys brain evolution. Systematic Biology doi: 10.1093/sysbio/syy045.
mvgls
mvgls.pca
mvOU
mvBM
mvEB
mvSHIFT
mvOUTS
mvRWTS
mvSIM
mvLL
LRT
halflife
stationary
estim
aicw
GIC