all_neon_tick_data

A dataset containing timeseries of Amblyomma americanum and Ixodes scapularis nymph abundances at NEON sites

datasets

Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2022) <doi:10.1111/2041-210X.13974>.

Nicholas J Clark

mvgam

Multivariate (Dynamic) Generalized Additive Models

Sarah Heaps

Scott Pease

Matthijs Hollanders

all_neon_tick_data function

A tibble/dataframe containing covariate information alongside the main fields of:<dl>
<dt>Year</dt>
<dd>Year of sampling</dd><dt>epiWeek</dt>
<dd>Epidemiological week of sampling</dd><dt>plot_ID</dt>
<dd>NEON plot ID for survey location</dd><dt>siteID</dt>
<dd>NEON site ID for survey location</dd><dt>amblyomma_americanum</dt>
<dd>Counts of A. americanum nymphs</dd><dt>ixodes_scapularis</dt>
<dd>Counts of I. scapularis nymphs</dd>
</dl>

Format

NEON Amblyomma and Ixodes tick abundance survey data — all_neon_tick_data

A tibble/dataframe containing covariate information alongside the main fields of:<dl>
<dt>Year</dt>
<dd>Year of sampling</dd>

<dt>epiWeek</dt>
<dd>Epidemiological week of sampling</dd>

<dt>plot_ID</dt>
<dd>NEON plot ID for survey location</dd>

<dt>siteID</dt>
<dd>NEON site ID for survey location</dd>

<dt>amblyomma_americanum</dt>
<dd>Counts of A. americanum nymphs</dd>

<dt>ixodes_scapularis</dt>
<dd>Counts of I. scapularis nymphs</dd>


</dl>

all_neon_tick_data: NEON Amblyomma and Ixodes tick abundance survey data

Description

Usage

Arguments

Format