portal_data

A dataset containing timeseries of total captures (across all control plots) for select rodent species from the Portal Project

datasets

Fit Bayesian Dynamic Generalized Additive Models to multivariate observations. Users can build nonlinear State-Space models that can incorporate semiparametric effects in observation and process components, using a wide range of observation families. Estimation is performed using Markov Chain Monte Carlo with Hamiltonian Monte Carlo in the software 'Stan'. References: Clark & Wells (2022) <doi:10.1111/2041-210X.13974>.

Nicholas J Clark

mvgam

Multivariate (Dynamic) Generalized Additive Models

Sarah Heaps

Scott Pease

Matthijs Hollanders

portal_data function

A dataframe containing the following fields:<dl>
<dt>moon</dt>
<dd>time of sampling in lunar cycles</dd><dt>DM</dt>
<dd>Total captures of species Dipodomys merriami</dd><dt>DO</dt>
<dd>Total captures of species Dipodomys ordii</dd><dt>PP</dt>
<dd>Total captures of species Chaetodipus penicillatus</dd><dt>OT</dt>
<dd>Total captures of species Onychomys torridus</dd><dt>year</dt>
<dd>Sampling year</dd><dt>month</dt>
<dd>Sampling month</dd><dt>mintemp</dt>
<dd>Monthly mean minimum temperature</dd><dt>precipitation</dt>
<dd>Monthly mean precipitation</dd><dt>ndvi</dt>
<dd>Monthly mean Normalised Difference Vegetation Index</dd>
</dl>

Format

Portal Project rodent capture survey data — portal_data

A dataframe containing the following fields:<dl>
<dt>moon</dt>
<dd>time of sampling in lunar cycles</dd>

<dt>DM</dt>
<dd>Total captures of species Dipodomys merriami</dd>

<dt>DO</dt>
<dd>Total captures of species Dipodomys ordii</dd>

<dt>PP</dt>
<dd>Total captures of species Chaetodipus penicillatus</dd>

<dt>OT</dt>
<dd>Total captures of species Onychomys torridus</dd>

<dt>year</dt>
<dd>Sampling year</dd>

<dt>month</dt>
<dd>Sampling month</dd>

<dt>mintemp</dt>
<dd>Monthly mean minimum temperature</dd>

<dt>precipitation</dt>
<dd>Monthly mean precipitation</dd>

<dt>ndvi</dt>
<dd>Monthly mean Normalised Difference Vegetation Index</dd>


</dl>

portal_data: Portal Project rodent capture survey data

Description

Usage

Arguments

Format