mycobacrvR (version 1.1)

abcpred_nmer: Epitope conservation prediction from ABCpred server information

Description

abcpred_nmer is a method to predict conservation of epitopes among orthologs from ABCPred server data

Usage

abcpred_nmer(epi_length)

Arguments

epi_length

A character vector of epitope length

Value

abcpred_nmer() will write two files in the working directory. One file contains the information of epitope and the other file contains metadata for epitope that shows orthologs of H37Rv contating that epitope

Details

This function takes epitope length as input into epi_length object. Input data for this function is present in "/data_mycobacrvR/abcpred_out" directory, therefore set this directory as working directory before using this function. ABCPred server provide epitopes by selecting window size of epitope length such as 10, 12, 14, 16, 18, 20. Therefore epi_length should be given as "10mer".

Examples

# NOT RUN {
abcpred_nmer("10mer")
# }
# NOT RUN {
##Conservation of all 10mer epitopes from ABCPred server
# }